Pseudomonas protegens Pf-5, PFL_3121 (fapD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3121
Name
fapD
Replicon chromosome
Genomic location 3591363 - 3592043 (+ strand)

Cross-References

RefSeq YP_260227.1
GI 70730486
Entrez 3477292
INSDC AAY92391.1
NCBI Locus Tag PFL_3121
UniParc UPI000054D738
UniProtKB Acc Q4KC06
UniProtKB ID Q4KC06_PSEF5
UniRef100 UniRef100_Q4KC06
UniRef50 UniRef50_G8PYP8
UniRef90 UniRef90_Q4KC06

Product

Feature Type CDS
Coding Frame 1
Product Name
FapD
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 2.86
Kyte-Doolittle Hydrophobicity Value 0.046
Molecular Weight (kDa) 25.3
Isoelectric Point (pI) 8.45

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 102 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003479 (780 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3121
Search term: fapD
Search term: FapD

Human Homologs

References

Functional amyloid in Pseudomonas.
Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE
Mol Microbiol 2010 Aug;77(4):1009-20
PubMed ID: 20572935