Pseudomonas aeruginosa PAO1, PA3161 (himD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA3161
Name
himD
Replicon chromosome
Genomic location 3547689 - 3547973 (- strand)
Transposon Mutants 1 transposon mutants in PAO1

Cross-References

RefSeq NP_251851.1
GI 15598357
Affymetrix PA3161_himD_at
DNASU PaCD00007391
Entrez 882561
GenBank AAG06549.1
INSDC AAG06549.1
NCBI Locus Tag PA3161
protein_id(GenBank) gb|AAG06549.1|AE004740_2|gnl|PseudoCAP|PA3161
TIGR NTL03PA03161
UniParc UPI0000001566
UniProtKB Acc Q51473
UniProtKB ID IHFB_PSEAE
UniRef100 UniRef100_A6V2R4
UniRef50 UniRef50_P23303
UniRef90 UniRef90_Q885T0

Product

Feature Type CDS
Coding Frame 1
Product Name
integration host factor beta subunit
Product Name Confidence: Class 1
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 3.71
Kyte-Doolittle Hydrophobicity Value -0.646
Molecular Weight (kDa) 10.6
Isoelectric Point (pI) 10.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 555 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002454 (556 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3161
Search term: himD

Transposon Insertions in PAO1

Type ISphoA/hah insertion site
Mutant ID UWGC: 49243
Genomic Position 3547784
Position in ORF 96(285)
Reference 14617778

Transposon Insertions in Orthologs

References

Pseudomonas aeruginosa contains an IHF-like protein that binds to the algD promoter.
Toussaint B, Delic-Attree I, Vignais PM
Biochem. Biophys. Res. Commun. 1993 Oct;196(1):416-421
PubMed ID: 8216322
Cloning and sequence analyses of the genes coding for the integration host factor (IHF) and HU proteins of Pseudomonas aeruginosa.
Delic-Attree I, Toussaint B, Vignais PM
Gene 1995 Feb;154(1):61-4
PubMed ID: 7867950