Motif View

Internal ID 17655607
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GGGCGCAACGGCCGTGACCGTTGCGCCC
Look for more occurrences
Start 16299
End 16326
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAATCTGGAGGAA(5' tail) GGGCGCAACGG(5' stem) CCGTGA(loop) CCGTTGCGCCC(3' stem) TTCTTCATTCAGGAG(3' tail). Confidence: 100. opp_overlap 16299, overlap 16296

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685