Motif View

Internal ID 17655608
Source Database TransTermHP TERM 12
Feature Type terminator
Name
Rho-independent transcription terminator TERM 12
Sequence GGGCGCAACGGTCACGGCCGTTGCGCCC
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Start 16299
End 16326
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAATCTGGAGGAA(5' tail) GGGCGCAACGGC(5' stem) CGTG(loop) ACCGTTGCGCCC(3' stem) TTCTTCATTCAGGAG(3' tail). Confidence: 93. opp_overlap 16299 16296

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685