Motif View

Internal ID 17655622
Source Database TransTermHP TERM 38
Feature Type terminator
Name
Rho-independent transcription terminator TERM 38
Sequence CGCGGCGGCTCAGGCCGCCGCG
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Start 217896
End 217917
Strand +
Genomic Context Located within gene [PA0191]
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAGGAAGGGAAACCG(5' tail) CGCGGCGGC(5' stem) TCAG(loop) GCCGCCGCG(3' stem) TGTTGCGCCTGGTCC(3' tail). Confidence: 91. opp_overlap 217894 217893

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685