Motif View

Internal ID 17656611
Source Database TransTermHP TERM 43
Feature Type terminator
Name
Rho-independent transcription terminator TERM 43
Sequence GACCGCTCCGATCCGGGCAGGGGAGAGCGGTC
Look for more occurrences
Start 226128
End 226159
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGGCAACGGTTTC(5' tail) GACCGCTCCGATCC(5' stem) GGGCA(loop) GGGGAG-AGCGGTC(3' stem) TTTTTTATTCCGGAT(3' tail). Confidence: 91. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685