Pseudomonas putida KT2440

Strain Overview
Organism Name Pseudomonas putida KT2440 (TIGR)
Species Pseudomonas putida
Strain KT2440
Description/Title Sample from Pseudomonas putida KT2440
Annotated Genes 5729
Partial Genes
Host Information
Geographic Location
Isolation Source soil

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 69
rpoB
1
ileS
3
ppsA
1
argS
37
recA
1
nuoC
45
gyrB
44
rpoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603999
NCBI Taxonomy ID 160488
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas putida KT2440 chromosome, complete genome.

Annotated Features

Feature Count
gene 5729
CDS 5564
tRNA 75
ncRNA 67
pseudo 57
rRNA 22
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2458
Cytoplasmic Membrane 1255
Periplasmic 158
Outer Membrane 149
Extracellular 53
Unknown 1363
Unknown (This protein may have multiple localization sites) 132
Flagellar 17
Fimbrial 2

Replicons

Name Length GC
Pseudomonas putida KT2440 chromosome, complete genome. 6181873 bp 61.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs