Pseudomonas putida KT2440

Strain Overview
Organism Name Pseudomonas putida KT2440 (TIGR)
Species Pseudomonas putida
Strain KT2440
Description/Title Sample from Pseudomonas putida KT2440
Annotated Genes 5729
Partial Genes
Host Information
Geographic Location
Isolation Source soil

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 69
gyrB
44		 argS
37		 rpoB
1		 ileS
3		 ppsA
1		 nuoC
45		 rpoD
1		 recA
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000007565.2
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603999
NCBI Taxonomy ID 160488
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida KT2440 chromosome, complete genome.

Annotated Features

Feature Count
gene 5729
CDS 5564
tRNA 75
ncRNA 67
pseudo 57
rRNA 22
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2458
Cytoplasmic Membrane 1255
Periplasmic 158
Outer Membrane 149
Extracellular 53
Unknown 1363
Unknown (This protein may have multiple localization sites) 132
Flagellar 17
Fimbrial 2

Replicons

Name Length GC
Pseudomonas putida KT2440 chromosome, complete genome. 6181873 bp 61.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs