Pseudomonas syringae pv. tomato DC3000

Strain Overview
Organism Name Pseudomonas syringae pv. tomato DC3000
Species Pseudomonas syringae pv. tomato
Strain DC3000
Subspecific Genetic Lineage
Description/Title Sample from Pseudomonas syringae pv. tomato str. DC3000
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5842
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMN02604017
NCBI Biosample ID 2604017
NCBI Taxonomy ID 223283
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5834
CDS 5619
tRNA 63
ncRNA 28
pseudo 16
rRNA 15

Subcellular Localization

Localization Count
Cytoplasmic 2381
Cytoplasmic Membrane 1212
Periplasmic 172
Outer Membrane 121
Extracellular 73
Unknown 1535
Unknown (This protein may have multiple localization sites) 125
Flagellar 17
Fimbrial 7
T3SS 2
Sample Provider
Name
E-mail
Institution
Date Collected
Geographic Location
Host Information
Pathogenicity (?) pathogenic on tomato and Arabidopsis thaliana
Host Species Taxonomic Name Solanum lycopersicum
Host Species Common Name tomato
Host Species Taxonomy ID 4081
Host Species Disease bacterial speck

Replicons

Name Length GC
Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. 6397126 bp 58.4%
Replicon details
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence. 73661 bp 55.1%
Replicon details
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence. 67473 bp 56.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF