Pseudomonas fluorescens SBW25

Strain Overview
Organism Name Pseudomonas fluorescens SBW25
Species Pseudomonas fluorescens
Strain SBW25
Subspecific Genetic Lineage
Description/Title Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Women's Health Initiative"
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6106
References
Partial Genes 5
Cross-References
NCBI BioSample Accession SAMEA2272316
NCBI Biosample ID
NCBI Taxonomy ID 9606
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas fluorescens SBW25 chromosome, complete genome.

Annotated Features

Feature Count
gene 6106
CDS 5921
tRNA 66
rRNA 16
misc_RNA 15

Subcellular Localization

Localization Count
Cytoplasmic 2590
Cytoplasmic Membrane 1443
Periplasmic 210
Outer Membrane 160
Extracellular 68
Unknown 1311
Unknown (This protein may have multiple localization sites) 139
Flagellar 18
Fimbrial 6
T3SS 2
Sample Provider
Name
E-mail
Institution Wellcome Trust Sanger Institute
Date Collected 1989
Geographic Location
Location Name United Kingdom: Oxfordshire
Isolation Source leaf surface
Host Information
Host Species Taxonomic Name Beta vulgaris subsp. vulgaris
Host Species Common Name sugar beet
Host Species Taxonomy ID 3555

Replicons

Name Length GC
Pseudomonas fluorescens SBW25 chromosome, complete genome. 6722539 bp 60.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF