Strain Overview | |
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Organism Name | Pseudomonas entomophila L48 |
Species | Pseudomonas entomophila |
Strain | L48 |
Description/Title | Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Sequencing of Targeted Genomic Regions Associated with Smoking" |
Annotated Genes | 5275 |
Partial Genes |
Host Information |
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Geographic Location |
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Sample Provider | |
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Name | |
Institution | Genoscope |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | 1 |
Contigs | |
Contig N50 | 5888780 |
Assembly Level | Complete Genome |
Percent GC | 64.2 |
Cross-References | |
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NCBI BioSample Accession | SAMEA3138225 |
NCBI Taxonomy ID | 9606 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas entomophila L48 chromosome, complete genome. |
Feature | Count |
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gene | 5275 |
CDS | 5134 |
tRNA | 78 |
rRNA | 22 |
misc_RNA | 7 |
Localization | Count |
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Cytoplasmic | 2287 |
Cytoplasmic Membrane | 1178 |
Periplasmic | 156 |
Outer Membrane | 140 |
Extracellular | 51 |
Unknown | 1183 |
Unknown (This protein may have multiple localization sites) | 139 |
Flagellar | 17 |
Fimbrial | 3 |
Name | Length | GC | |
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Pseudomonas entomophila L48 chromosome, complete genome. | 5888780 bp | 64.2% |
Replicon details
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Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |