Pseudomonas putida F1

Strain Overview
Organism Name Pseudomonas putida F1
Species Pseudomonas putida
Strain F1
Description/Title Sample of PSEUDOMONAS PUTIDA F1
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5402
Partial Genes
Cross-References
NCBI BioSample Accession SAMN00623058
NCBI Taxonomy ID 351746
NCBI Bioprojects
Assembly DB
RefSeq
Assembly Accession
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas putida F1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5402
CDS 5249
tRNA 75
pseudo 56
rRNA 19
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2381
Cytoplasmic Membrane 1226
Periplasmic 163
Outer Membrane 144
Extracellular 40
Unknown 1164
Unknown (This protein may have multiple localization sites) 131
Flagellar 19
Fimbrial 3
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected
Geographic Location
Location Name USA: Illinois, Urbana
Isolation Source polluted creek
Host Information

Replicons

Name Length GC
Pseudomonas putida F1 chromosome, complete genome. 5959964 bp 61.9%
Replicon details

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Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF