Pseudomonas putida F1

Strain Overview
Organism Name Pseudomonas putida F1
Species Pseudomonas putida
Strain F1
Subspecific Genetic Lineage
Description/Title Sample of PSEUDOMONAS PUTIDA F1
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5402
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMN00623058
NCBI Biosample ID 623058
NCBI Taxonomy ID 351746
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas putida F1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5402
CDS 5249
tRNA 75
pseudo 56
rRNA 19
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2381
Cytoplasmic Membrane 1226
Periplasmic 163
Outer Membrane 144
Extracellular 40
Unknown 1164
Unknown (This protein may have multiple localization sites) 131
Flagellar 19
Fimbrial 3
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected
Geographic Location
Location Name USA: Illinois, Urbana
Isolation Source polluted creek
Host Information

Replicons

Name Length GC
Pseudomonas putida F1 chromosome, complete genome. 5959964 bp 61.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF