Pseudomonas aeruginosa 39016

Strain Overview
Organism Name Pseudomonas aeruginosa 39016 - Assembly GCF_000148745.1
Species Pseudomonas aeruginosa
Strain 39016
Description/Title Sample from Pseudomonas aeruginosa 39016
Annotated Genes 6468
Partial Genes
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease keratitis
Geographic Location
Isolation Source cornea

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
trpE
4		 ppsA
2		 aroE
11		 guaA
3		 acsA
38		 nuoD
1		 mutL
13
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000148745.1
Assembly Status latest
Scaffolds 1
Contigs 349
Contig N50 35210
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02471834
NCBI Taxonomy ID 798130
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 6459
CDS 6401
tRNA 58
pseudo 9

Subcellular Localization

Localization Count
Cytoplasmic 2734
Cytoplasmic Membrane 1327
Periplasmic 168
Outer Membrane 169
Extracellular 66
Unknown 1797
Unknown (This protein may have multiple localization sites) 140
Flagellar 17
Fimbrial 4
T3SS 3

Replicons

Name Length GC
Pseudomonas aeruginosa 39016 chromosome, whole genome shotgun sequence. 6866064 bp 64.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs