Pseudomonas brassicacearum subsp. brassicacearum NFM421

Strain Overview
Organism Name Pseudomonas brassicacearum subsp. brassicacearum NFM421
Species Pseudomonas brassicacearum subsp. brassicacearum
Strain NFM421
Subspecific Genetic Lineage
Description/Title Sample from Pseudomonas brassicacearum subsp. brassicacearum NFM421
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6176
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMN02603052
NCBI Biosample ID 2603052
NCBI Taxonomy ID 994484
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.

Annotated Features

Feature Count
gene 6176
CDS 6095
tRNA 65
rRNA 16

Subcellular Localization

Localization Count
Cytoplasmic 2690
Cytoplasmic Membrane 1412
Periplasmic 201
Outer Membrane 126
Extracellular 52
Unknown 1486
Unknown (This protein may have multiple localization sites) 128
Flagellar 30
Fimbrial 2
T3SS 2
Sample Provider
Name
E-mail
Institution
Date Collected
Geographic Location
Isolation Source rhizoplane
Host Information
Host Species Taxonomic Name Arabidopsis thaliana
Host Species Common Name thale cress
Host Species Taxonomy ID 3702

Replicons

Name Length GC
Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome. 6843248 bp 60.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

Download Intergenic Region Annotations

File also contains gene annotations

GTF