Pseudomonas aeruginosa 3581

Strain Overview
Organism Name Pseudomonas aeruginosa 3581
Species Pseudomonas aeruginosa
Strain 3581
Description/Title Sample from Pseudomonas aeruginosa 3581
Annotated Genes 6508
Partial Genes 118
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 395
trpE
1
ppsA
12
guaA
1
acsA
6
aroE
5
mutL
1
nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 77
Contigs 78
Contig N50 279586
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584694
NCBI Taxonomy ID 1447536
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6489
CDS 6416
tRNA 62
pseudo 19
rRNA 7
ncRNA 4

Subcellular Localization

Localization Count
Cytoplasmic 2835
Cytoplasmic Membrane 1398
Periplasmic 170
Outer Membrane 167
Extracellular 82
Unknown 1608
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

77 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF