Pseudomonas aeruginosa 3580

Strain Overview
Organism Name Pseudomonas aeruginosa 3580
Species Pseudomonas aeruginosa
Strain 3580
Description/Title Sample from Pseudomonas aeruginosa 3580
Annotated Genes 6520
Partial Genes 114
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 395
guaA
1		 ppsA
12		 mutL
1		 aroE
5		 acsA
6		 trpE
1		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629185.1
Assembly Status latest
Scaffolds 72
Contigs 75
Contig N50 269431
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584693
NCBI Taxonomy ID 1447535
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6501
CDS 6426
tRNA 64
pseudo 19
rRNA 7
ncRNA 4

Subcellular Localization

Localization Count
Cytoplasmic 2834
Cytoplasmic Membrane 1400
Periplasmic 174
Outer Membrane 166
Extracellular 81
Unknown 1615
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

72 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF