Pseudomonas aeruginosa 3578

Strain Overview
Organism Name Pseudomonas aeruginosa 3578
Species Pseudomonas aeruginosa
Strain 3578
Description/Title Sample from Pseudomonas aeruginosa 3578
Annotated Genes 6362
Partial Genes 165
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 500
nuoD
4		 mutL
3		 guaA
7		 aroE
57		 acsA
11		 trpE
1		 ppsA
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629225.1
Assembly Status latest
Scaffolds 112
Contigs 115
Contig N50 180909
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584691
NCBI Taxonomy ID 1447533
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6340
CDS 6263
tRNA 66
pseudo 22
rRNA 10
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2785
Cytoplasmic Membrane 1383
Periplasmic 167
Outer Membrane 163
Extracellular 76
Unknown 1544
Unknown (This protein may have multiple localization sites) 145
Flagellar 17
Fimbrial 11
T3SS 4

Replicons

112 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF