Pseudomonas aeruginosa 3576

Strain Overview
Organism Name Pseudomonas aeruginosa 3576
Species Pseudomonas aeruginosa
Strain 3576
Description/Title Sample from Pseudomonas aeruginosa 3576
Annotated Genes 6301
Partial Genes 138
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 390
trpE
56
ppsA
46
aroE
5
nuoD
4
guaA
1
acsA
39
mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 87
Contigs 88
Contig N50 188387
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584689
NCBI Taxonomy ID 1447531
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6279
CDS 6210
tRNA 57
pseudo 22
rRNA 10
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2754
Cytoplasmic Membrane 1369
Periplasmic 170
Outer Membrane 171
Extracellular 81
Unknown 1514
Unknown (This protein may have multiple localization sites) 151
Flagellar 15
Fimbrial 8
T3SS 3

Replicons

87 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF