Pseudomonas aeruginosa 3575

Strain Overview
Organism Name Pseudomonas aeruginosa 3575
Species Pseudomonas aeruginosa
Strain 3575
Description/Title Sample from Pseudomonas aeruginosa 3575
Annotated Genes 6316
Partial Genes 124
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 347
nuoD
4
mutL
5
aroE
5
trpE
7
guaA
17
acsA
40
ppsA
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 76
Contigs 79
Contig N50 196474
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584688
NCBI Taxonomy ID 1447530
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6293
CDS 6220
tRNA 63
pseudo 23
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2816
Cytoplasmic Membrane 1380
Periplasmic 173
Outer Membrane 167
Extracellular 78
Unknown 1452
Unknown (This protein may have multiple localization sites) 154
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

76 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF