Pseudomonas aeruginosa 3573

Strain Overview
Organism Name Pseudomonas aeruginosa 3573
Species Pseudomonas aeruginosa
Strain 3573
Description/Title Sample from Pseudomonas aeruginosa 3573
Annotated Genes 5778
Partial Genes 88
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected Unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 9
trpE
7		 ppsA
4		 nuoD
3		 mutL
3		 guaA
4		 aroE
6		 acsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629325.1
Assembly Status latest
Scaffolds 74
Contigs 78
Contig N50 295035
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584686
NCBI Taxonomy ID 1447528
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5765
CDS 5691
tRNA 65
pseudo 13
rRNA 8
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2615
Cytoplasmic Membrane 1318
Periplasmic 163
Outer Membrane 160
Extracellular 70
Unknown 1211
Unknown (This protein may have multiple localization sites) 154
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

74 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF