Strain Overview | |
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Organism Name | Pseudomonas aeruginosa AZPAE12138 |
Species | Pseudomonas aeruginosa |
Strain | AZPAE12138 |
Description/Title | Microbe sample from Pseudomonas aeruginosa |
Annotated Genes | 6188 |
Partial Genes | 175 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location | |
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Location Name | USA: New York |
Sample Provider | |
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Name | Veronica Kos |
veronica.kos@astrazeneca.com | |
Institution | AstraZeneca |
Date Collected | unknown |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 348 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 165 |
Contig N50 | 137820 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03105383 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6072 |
CDS | 5998 |
pseudo | 116 |
tRNA | 56 |
rRNA | 4 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2710 |
Cytoplasmic Membrane | 1314 |
Periplasmic | 166 |
Outer Membrane | 175 |
Extracellular | 69 |
Unknown | 1419 |
Unknown (This protein may have multiple localization sites) | 145 |
Flagellar | 17 |
Fimbrial | 8 |
T3SS | 4 |
Antibiotic | Phenotype | PMID |
---|---|---|
meropenem | susceptible | 25367914 |
levofloxacin | susceptible | 25367914 |
colistin | susceptible | 25367914 |
amikacin | resistant | 25367914 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |