Pseudomonas aeruginosa AZPAE12135

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE12135
Species Pseudomonas aeruginosa
Strain AZPAE12135
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6503
Partial Genes 271
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA: New York
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 27
guaA
6
nuoD
4
acsA
6
trpE
7
aroE
5
mutL
7
ppsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 313
Contig N50 101387
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105380
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6442
CDS 6337
tRNA 61
pseudo 61
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2798
Cytoplasmic Membrane 1388
Periplasmic 169
Outer Membrane 169
Extracellular 74
Unknown 1590
Unknown (This protein may have multiple localization sites) 149
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

190 replicons associated with this assembly

Antibiotic Resistance/Susceptibility

Antibiotic Phenotype PMID
meropenem susceptible 25367914
amikacin susceptible 25367914
levofloxacin susceptible 25367914
colistin susceptible 25367914

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF