Pseudomonas aeruginosa AZPAE12144

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE12144
Species Pseudomonas aeruginosa
Strain AZPAE12144
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5992
Partial Genes 208
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA: New York
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
mutL
3
aroE
76
trpE
~3
guaA
5
acsA
11
ppsA
14
nuoD
61
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 167
Contig N50 97162
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105387
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5867
CDS 5801
pseudo 125
tRNA 56
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2649
Cytoplasmic Membrane 1330
Periplasmic 167
Outer Membrane 164
Extracellular 65
Unknown 1280
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

150 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF