| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa AZPAE12146 |
| Species | Pseudomonas aeruginosa |
| Strain | AZPAE12146 |
| Description/Title | Microbe sample from Pseudomonas aeruginosa |
| Annotated Genes | 5844 |
| Partial Genes | 105 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | USA: New York |
| Sample Provider | |
|---|---|
| Name | Veronica Kos |
| veronica.kos@astrazeneca.com | |
| Institution | AstraZeneca |
| Date Collected | unknown |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 93 |
| Contig N50 | 259058 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03105389 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5818 |
| CDS | 5754 |
| tRNA | 56 |
| pseudo | 26 |
| rRNA | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2631 |
| Cytoplasmic Membrane | 1327 |
| Periplasmic | 163 |
| Outer Membrane | 159 |
| Extracellular | 71 |
| Unknown | 1253 |
| Unknown (This protein may have multiple localization sites) | 150 |
| Flagellar | 17 |
| Fimbrial | 5 |
| T3SS | 4 |
| Antibiotic | Phenotype | PMID |
|---|---|---|
| meropenem | susceptible | 25367914 |
| amikacin | susceptible | 25367914 |
| levofloxacin | susceptible | 25367914 |
| colistin | susceptible | 25367914 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |