Pseudomonas simiae WCS417

Strain Overview
Organism Name Pseudomonas simiae WCS417
Species Pseudomonas simiae
Strain WCS417
Description/Title Microbe sample from Pseudomonas simiae
Annotated Genes 5624
Partial Genes 55
Host Information
Host Species Taxonomic Name Triticum aestivum
Host Species Common Name wheat
Host Species Taxonomy ID 4565
Geographic Location
Location Name Netherlands: Flevoland
Isolation Source wheat rhizosphere
Sample Provider
Name Roeland Berendsen
E-mail r.l.berendsen@uu.nl
Institution Utrecht University, Utrecht, NETHERLANDS
Date Collected 1988

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 6
Contig N50 1317051
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02739889
NCBI Taxonomy ID 321846
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas simiae strain WCS417.

Annotated Features

Feature Count
gene 5596
CDS 5521
tRNA 65
pseudo 28
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2398
Cytoplasmic Membrane 1326
Periplasmic 210
Outer Membrane 147
Extracellular 64
Unknown 1235
Unknown (This protein may have multiple localization sites) 141
Flagellar 19
Fimbrial 9
T3SS 2

Replicons

Name Length GC
Pseudomonas simiae strain WCS417. 6169071 bp 60.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF