Strain Overview | |
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Organism Name | Pseudomonas simiae WCS417 |
Species | Pseudomonas simiae |
Strain | WCS417 |
Description/Title | Microbe sample from Pseudomonas simiae |
Annotated Genes | 5624 |
Partial Genes | 55 |
Host Information | |
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Host Species Taxonomic Name | Triticum aestivum |
Host Species Common Name | wheat |
Host Species Taxonomy ID | 4565 |
Geographic Location | |
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Location Name | Netherlands: Flevoland |
Isolation Source | wheat rhizosphere |
Sample Provider | |
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Name | Roeland Berendsen |
r.l.berendsen@uu.nl | |
Institution | Utrecht University, Utrecht, NETHERLANDS |
Date Collected | 1988 |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 6 |
Contig N50 | 1317051 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02739889 |
NCBI Taxonomy ID | 321846 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas simiae strain WCS417. |
Feature | Count |
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gene | 5596 |
CDS | 5521 |
tRNA | 65 |
pseudo | 28 |
rRNA | 9 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2398 |
Cytoplasmic Membrane | 1326 |
Periplasmic | 210 |
Outer Membrane | 147 |
Extracellular | 64 |
Unknown | 1235 |
Unknown (This protein may have multiple localization sites) | 141 |
Flagellar | 19 |
Fimbrial | 9 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas simiae strain WCS417. | 6169071 bp | 60.3% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |