Strain Overview | |
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Organism Name | Pseudomonas sp. RL |
Species | Pseudomonas sp. |
Strain | RL |
Description/Title | Sample from Pseudomonas sp. RL |
Annotated Genes | 3618 |
Partial Genes | 390 |
Host Information |
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Geographic Location | |
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Location Name | India: Chinhat, Lucknow |
Isolation Source | hexachlorocyclohexane (HCH) contaminated pond |
Sample Provider | |
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Name | |
Institution | University of Delhi, Department of Zoology |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 228 |
Contig N50 | 37443 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02732396 |
NCBI Taxonomy ID | 1452718 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 3605 |
CDS | 3559 |
tRNA | 37 |
pseudo | 13 |
rRNA | 8 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 1656 |
Cytoplasmic Membrane | 878 |
Periplasmic | 90 |
Outer Membrane | 72 |
Extracellular | 31 |
Unknown | 738 |
Unknown (This protein may have multiple localization sites) | 94 |
Flagellar | 32 |
Fimbrial | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |