Strain Overview | |
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Organism Name | Pseudomonas syringae pv. syringae B64 |
Species | Pseudomonas syringae pv. syringae |
Strain | B64 |
Description/Title | Sample from Pseudomonas syringae pv. syringae B64 |
Annotated Genes | 5019 |
Partial Genes | 18 |
Host Information | |
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Host Species Taxonomic Name | Triticum aestivum |
Host Species Common Name | wheat |
Host Species Taxonomy ID | 4565 |
Geographic Location | |
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Isolation Source | leaf |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 42 |
Contig N50 | 329354 |
Assembly Level | Chromosome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02472031 |
NCBI Taxonomy ID | 1260626 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. |
Feature | Count |
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gene | 5008 |
CDS | 4873 |
tRNA | 61 |
rRNA | 13 |
pseudo | 11 |
Localization | Count |
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Cytoplasmic | 2162 |
Cytoplasmic Membrane | 1144 |
Periplasmic | 159 |
Outer Membrane | 95 |
Extracellular | 59 |
Unknown | 1133 |
Unknown (This protein may have multiple localization sites) | 121 |
Flagellar | 17 |
Fimbrial | 4 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence. | 5930035 bp | 58.6% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |