| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae pv. syringae SM |
| Species | Pseudomonas syringae pv. syringae |
| Strain | SM |
| Description/Title | Sample from Pseudomonas syringae pv. syringae SM |
| Annotated Genes | 5293 |
| Partial Genes | 17 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Triticum aestivum |
| Host Species Common Name | wheat |
| Host Species Taxonomy ID | 4565 |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | leaf |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 26 |
| Contig N50 | 671136 |
| Assembly Level | Chromosome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02472030 |
| NCBI Taxonomy ID | 1262350 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5285 |
| CDS | 5064 |
| tRNA | 64 |
| rRNA | 16 |
| pseudo | 8 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2216 |
| Cytoplasmic Membrane | 1184 |
| Periplasmic | 159 |
| Outer Membrane | 98 |
| Extracellular | 71 |
| Unknown | 1211 |
| Unknown (This protein may have multiple localization sites) | 125 |
| Flagellar | 17 |
| Fimbrial | 8 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas syringae pv. syringae SM chromosome, whole genome shotgun sequence. | 6077542 bp | 58.8% |
Replicon details
|
| Pseudomonas syringae pv. syringae SM plasmid unnamed, complete sequence, whole genome shotgun sequence. | 46560 bp | 54.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |