Pseudomonas aeruginosa 1046_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 1046_PAER
Species Pseudomonas aeruginosa
Strain 1046_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6038
Partial Genes 314
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
ppsA
10		 trpE
112		 guaA
5		 nuoD
3		 aroE
40		 mutL
13		 acsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001060185.1
Assembly Status latest
Scaffolds
Contigs 337
Contig N50 49324
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197012
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6024
CDS 5989
tRNA 31
pseudo 14
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2696
Cytoplasmic Membrane 1368
Periplasmic 175
Outer Membrane 174
Extracellular 70
Unknown 1356
Unknown (This protein may have multiple localization sites) 150

Replicons

337 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF