Pseudomonas aeruginosa 130_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 130_PAER
Species Pseudomonas aeruginosa
Strain 130_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6411
Partial Genes 155
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
ppsA
4
mutL
3
guaA
20
nuoD
1
trpE
25
aroE
5
acsA
15
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 153
Contig N50 148854
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197272
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6386
CDS 6313
tRNA 60
pseudo 25
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2832
Cytoplasmic Membrane 1388
Periplasmic 169
Outer Membrane 175
Extracellular 79
Unknown 1509
Unknown (This protein may have multiple localization sites) 161

Replicons

149 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF