Pseudomonas aeruginosa 1324_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 1324_PAER
Species Pseudomonas aeruginosa
Strain 1324_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 7379
Partial Genes 1235
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 253
nuoD
1		 ppsA
6		 acsA
4		 mutL
12		 guaA
16		 aroE
4		 trpE
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001061585.1
Assembly Status latest
Scaffolds
Contigs 1090
Contig N50 13410
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197304
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7353
CDS 7315
tRNA 28
pseudo 26
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3129
Cytoplasmic Membrane 1506
Periplasmic 193
Outer Membrane 193
Extracellular 75
Unknown 2066
Unknown (This protein may have multiple localization sites) 153

Replicons

1072 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF