Strain Overview | |
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Organism Name | Pseudomonas aeruginosa 1079_PAER |
Species | Pseudomonas aeruginosa |
Strain | 1079_PAER |
Description/Title | Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa |
Annotated Genes | 6102 |
Partial Genes | 428 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | USA: WA |
Sample Provider | |
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Name | Stephen Salipante |
stevesal@uw.edu | |
Institution | University of Washington |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 1596 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 459 |
Contig N50 | 35605 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03197042 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6081 |
CDS | 6047 |
tRNA | 30 |
pseudo | 21 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2719 |
Cytoplasmic Membrane | 1393 |
Periplasmic | 176 |
Outer Membrane | 171 |
Extracellular | 70 |
Unknown | 1370 |
Unknown (This protein may have multiple localization sites) | 148 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |