Pseudomonas aeruginosa 1079_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 1079_PAER
Species Pseudomonas aeruginosa
Strain 1079_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6102
Partial Genes 428
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1596
trpE
1
mutL
3
nuoD
3
guaA
1
ppsA
4
acsA
39
aroE
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 459
Contig N50 35605
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197042
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6081
CDS 6047
tRNA 30
pseudo 21
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2719
Cytoplasmic Membrane 1393
Periplasmic 176
Outer Membrane 171
Extracellular 70
Unknown 1370
Unknown (This protein may have multiple localization sites) 148

Replicons

459 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF