Pseudomonas aeruginosa 230_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 230_PAER
Species Pseudomonas aeruginosa
Strain 230_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6431
Partial Genes 151
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
nuoD
1		 ppsA
17		 trpE
13		 guaA
13		 aroE
4		 acsA
18		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001062995.1
Assembly Status latest
Scaffolds
Contigs 149
Contig N50 100542
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197421
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6403
CDS 6330
tRNA 55
pseudo 28
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2824
Cytoplasmic Membrane 1406
Periplasmic 178
Outer Membrane 185
Extracellular 74
Unknown 1511
Unknown (This protein may have multiple localization sites) 152

Replicons

136 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF