Pseudomonas aeruginosa 427_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 427_PAER
Species Pseudomonas aeruginosa
Strain 427_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6310
Partial Genes 108
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 253
nuoD
1		 ppsA
6		 acsA
4		 aroE
4		 mutL
12		 trpE
3		 guaA
16
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001064905.1
Assembly Status latest
Scaffolds
Contigs 100
Contig N50 119848
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197620
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6279
CDS 6202
tRNA 58
pseudo 31
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2779
Cytoplasmic Membrane 1367
Periplasmic 179
Outer Membrane 182
Extracellular 76
Unknown 1468
Unknown (This protein may have multiple localization sites) 151

Replicons

75 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF