Pseudomonas aeruginosa 462_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 462_PAER
Species Pseudomonas aeruginosa
Strain 462_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6409
Partial Genes 189
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
ppsA
17		 trpE
13		 acsA
18		 nuoD
1		 aroE
4		 guaA
13		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001065035.1
Assembly Status latest
Scaffolds
Contigs 181
Contig N50 88729
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197656
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6365
CDS 6289
tRNA 57
pseudo 44
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2793
Cytoplasmic Membrane 1404
Periplasmic 180
Outer Membrane 184
Extracellular 70
Unknown 1503
Unknown (This protein may have multiple localization sites) 155

Replicons

140 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF