Pseudomonas aeruginosa 576_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 576_PAER
Species Pseudomonas aeruginosa
Strain 576_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 5684
Partial Genes 506
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 116
guaA
22		 mutL
18		 nuoD
3		 trpE
7		 acsA
28		 ppsA
15		 aroE
24
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001065515.1
Assembly Status latest
Scaffolds
Contigs 430
Contig N50 28675
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197778
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5659
CDS 5614
tRNA 37
pseudo 25
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2549
Cytoplasmic Membrane 1319
Periplasmic 170
Outer Membrane 164
Extracellular 62
Unknown 1217
Unknown (This protein may have multiple localization sites) 133

Replicons

414 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF