Pseudomonas aeruginosa 681_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 681_PAER
Species Pseudomonas aeruginosa
Strain 681_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6105
Partial Genes 328
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 296
aroE
8		 ppsA
6		 acsA
44		 nuoD
15		 trpE
26		 mutL
3		 guaA
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001065925.1
Assembly Status latest
Scaffolds
Contigs 362
Contig N50 46618
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197884
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6092
CDS 6058
tRNA 30
pseudo 13
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2738
Cytoplasmic Membrane 1370
Periplasmic 181
Outer Membrane 168
Extracellular 69
Unknown 1379
Unknown (This protein may have multiple localization sites) 153

Replicons

362 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF