Pseudomonas aeruginosa 744_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 744_PAER
Species Pseudomonas aeruginosa
Strain 744_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6404
Partial Genes 635
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 17
aroE
5		 mutL
7		 guaA
1		 acsA
11		 trpE
7		 ppsA
4		 nuoD
9
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001066185.1
Assembly Status latest
Scaffolds
Contigs 664
Contig N50 32812
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197950
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6385
CDS 6352
tRNA 29
pseudo 19
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2825
Cytoplasmic Membrane 1440
Periplasmic 178
Outer Membrane 169
Extracellular 66
Unknown 1523
Unknown (This protein may have multiple localization sites) 151

Replicons

664 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF