Pseudomonas aeruginosa 852_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 852_PAER
Species Pseudomonas aeruginosa
Strain 852_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6478
Partial Genes 501
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 308
nuoD
12		 acsA
13		 mutL
5		 aroE
4		 guaA
5		 trpE
15		 ppsA
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001066615.1
Assembly Status latest
Scaffolds
Contigs 563
Contig N50 30370
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198061
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6453
CDS 6421
tRNA 28
pseudo 25
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2817
Cytoplasmic Membrane 1407
Periplasmic 182
Outer Membrane 180
Extracellular 74
Unknown 1608
Unknown (This protein may have multiple localization sites) 153

Replicons

562 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF