Pseudomonas aeruginosa 991.rep1_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 991.rep1_PAER
Species Pseudomonas aeruginosa
Strain 991.rep1_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6282
Partial Genes 395
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 274
trpE
7
nuoD
1
mutL
7
guaA
11
ppsA
12
acsA
23
aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 406
Contig N50 38788
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198212
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6270
CDS 6237
tRNA 29
pseudo 12
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2765
Cytoplasmic Membrane 1424
Periplasmic 179
Outer Membrane 175
Extracellular 74
Unknown 1473
Unknown (This protein may have multiple localization sites) 147

Replicons

406 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF