Pseudomonas aeruginosa 928_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 928_PAER
Species Pseudomonas aeruginosa
Strain 928_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6516
Partial Genes 999
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
ppsA
17		 trpE
13		 mutL
3		 acsA
18		 guaA
13		 nuoD
1		 aroE
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001067935.1
Assembly Status latest
Scaffolds
Contigs 890
Contig N50 15115
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198146
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6489
CDS 6456
tRNA 29
pseudo 27
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2843
Cytoplasmic Membrane 1443
Periplasmic 185
Outer Membrane 182
Extracellular 73
Unknown 1588
Unknown (This protein may have multiple localization sites) 142

Replicons

890 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF