Pseudomonas aeruginosa 927_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 927_PAER
Species Pseudomonas aeruginosa
Strain 927_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6305
Partial Genes 431
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 298
acsA
18		 trpE
13		 nuoD
1		 guaA
13		 aroE
4		 ppsA
17		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001068165.1
Assembly Status latest
Scaffolds
Contigs 474
Contig N50 31232
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03198145
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6275
CDS 6242
pseudo 30
tRNA 29
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2765
Cytoplasmic Membrane 1397
Periplasmic 184
Outer Membrane 170
Extracellular 73
Unknown 1501
Unknown (This protein may have multiple localization sites) 152

Replicons

474 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF