Pseudomonas aeruginosa 1152_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 1152_PAER
Species Pseudomonas aeruginosa
Strain 1152_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6683
Partial Genes 275
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
trpE
7
aroE
5
acsA
28
nuoD
3
ppsA
13
mutL
3
guaA
36
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 257
Contig N50 85589
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197108
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6656
CDS 6598
tRNA 47
pseudo 27
rRNA 9
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2929
Cytoplasmic Membrane 1468
Periplasmic 188
Outer Membrane 177
Extracellular 77
Unknown 1605
Unknown (This protein may have multiple localization sites) 154

Replicons

252 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF