Pseudomonas aeruginosa 660_PAER

Strain Overview
Organism Name Pseudomonas aeruginosa 660_PAER
Species Pseudomonas aeruginosa
Strain 660_PAER
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6768
Partial Genes 590
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: WA
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2475
nuoD
1		 mutL
3		 guaA
1		 trpE
1		 acsA
22		 ppsA
76		 aroE
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001077135.1
Assembly Status latest
Scaffolds
Contigs 565
Contig N50 25686
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197863
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6680
CDS 6571
pseudo 88
tRNA 52
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2881
Cytoplasmic Membrane 1398
Periplasmic 179
Outer Membrane 172
Extracellular 80
Unknown 1719
Unknown (This protein may have multiple localization sites) 142

Replicons

435 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF