Pseudomonas sp. 12M76_air

Strain Overview
Organism Name Pseudomonas sp. 12M76_air
Species Pseudomonas sp.
Strain 12M76_air
Description/Title DNA sample from Saliva of a human female participant in the dbGaP study "Resource for Genetic Epidemiology Research on Adult Health and Aging (GERA)"
Annotated Genes 3081
Partial Genes 119
Host Information
Geographic Location
Location Name Saudi Arabia: Mecca
Isolation Source air
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000939975.1
Assembly Status latest
Scaffolds
Contigs 7
Contig N50 722343
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2539499
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 3069
CDS 3002
tRNA 55
pseudo 12
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1475
Cytoplasmic Membrane 733
Periplasmic 64
Outer Membrane 72
Extracellular 23
Unknown 562
Unknown (This protein may have multiple localization sites) 73

Replicons

Name Length GC
Pseudomonas sp. 12M76_air. 3338867 bp 62.4%
Replicon details
Pseudomonas sp. 12M76_air. 4311 bp 60.3%
Replicon details
Pseudomonas sp. 12M76_air. 1033 bp 63.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF