| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas weihenstephanensis DSM 29166 |
| Species | Pseudomonas weihenstephanensis |
| Strain | DSM 29166 |
| Description/Title | Microbe sample from Pseudomonas sp. DSM 29166 |
| Annotated Genes | 4407 |
| Partial Genes | 109 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Germany: Southern Germany |
| Isolation Source | raw milk |
| Sample Provider | |
|---|---|
| Name | Mario von Neubeck |
| mario.von-neubeck@wzw.tum.de | |
| Institution | Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM |
| Date Collected | 2012-01-12 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 32 |
| Contig N50 | 571018 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03328806 |
| NCBI Taxonomy ID | 1608994 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4364 |
| CDS | 4294 |
| tRNA | 63 |
| pseudo | 43 |
| rRNA | 6 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 1825 |
| Cytoplasmic Membrane | 979 |
| Periplasmic | 140 |
| Outer Membrane | 110 |
| Extracellular | 62 |
| Unknown | 1087 |
| Unknown (This protein may have multiple localization sites) | 91 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |