Pseudomonas sp. HMP271

Strain Overview
Organism Name Pseudomonas sp. HMP271
Species Pseudomonas sp.
Strain HMP271
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas sp. HMP271
Annotated Genes 3711
Partial Genes 69
Host Information
Geographic Location
Location Name Canada: Quicksilver from Bowden, Alberta
Isolation Source lab enrichment culture in anaerobic medium
Latitude/Longitude 51.9740275 N 113.8051889 W
Environmental Feature (?) coal cutting
Environmental Material (?) lab enrichment culture in anaerobic medium
Sample Provider
Name Boon fei Tan
E-mail boonfei@ualberta.ca
Institution University of Alberta
Date Collected 15-Nov-2011

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000765155.1
Assembly Status latest
Scaffolds
Contigs 24
Contig N50 232729
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02726040
NCBI Taxonomy ID 1487922
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 3698
CDS 3641
tRNA 53
pseudo 13
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 1682
Cytoplasmic Membrane 874
Periplasmic 108
Outer Membrane 84
Extracellular 32
Unknown 760
Unknown (This protein may have multiple localization sites) 101

Replicons

24 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF