Strain Overview | |
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Organism Name | Pseudomonas veronii 1YB2 |
Species | Pseudomonas veronii |
Strain | 1YB2 |
Description/Title | Microbe sample from Pseudomonas veronii 1YB2 |
Annotated Genes | 6986 |
Partial Genes | 208 |
Host Information |
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Geographic Location | |
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Location Name | Czech Republic: Hradcany |
Isolation Source | contaminated soil |
Sample Provider | |
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Name | Daiana Morales |
daia.morales@gmail.com | |
Institution | Bacterial Abiotic Stress and Survival Improvement Network |
Date Collected | 2004 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 115 |
Contig N50 | 132526 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02692653 |
NCBI Taxonomy ID | 1436001 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6918 |
CDS | 6851 |
pseudo | 68 |
tRNA | 57 |
rRNA | 7 |
ncRNA | 2 |
Localization | Count |
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Cytoplasmic | 2931 |
Cytoplasmic Membrane | 1530 |
Periplasmic | 194 |
Outer Membrane | 155 |
Extracellular | 62 |
Unknown | 1823 |
Unknown (This protein may have multiple localization sites) | 156 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |