Pseudomonas aeruginosa ATCC 9027

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 9027 - Assembly GCF_001294675.1
Species Pseudomonas aeruginosa
Strain ATCC 9027
Description/Title Microbe sample from Pseudomonas aeruginosa: Gas Control Variant
Annotated Genes 5793
Partial Genes 141
Host Information
Host Species Disease outer ear infection
Geographic Location
Location Name Australia: Sydney
Sample Provider
Name Mark Bradbury
E-mail mark.bradbury@csiro.au
Institution CSIRO
Date Collected 2013-10-12

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2230
mutL
123		 nuoD
86		 aroE
198		 guaA
114		 acsA
87		 trpE
146		 ppsA
93
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001294675.1
Assembly Status latest
Scaffolds
Contigs 80
Contig N50 249007
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03268354
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5793
CDS 5726
pseudo 140
tRNA 58
rRNA 8
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2608
Cytoplasmic Membrane 1307
Periplasmic 172
Outer Membrane 160
Extracellular 48
Unknown 1282
Unknown (This protein may have multiple localization sites) 150
Flagellar 16
Fimbrial 8
Outer Membrane Vesicle 1

Replicons

80 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF