Strain Overview | |
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Organism Name | Pseudomonas aeruginosa 14650 |
Species | Pseudomonas aeruginosa |
Strain | 14650 |
Description/Title | Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa |
Annotated Genes | 5754 |
Partial Genes | 44 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | Pseudomonas aeruginosa |
Geographic Location | |
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Location Name | Canada:Alberta |
Isolation Source | sputum |
Latitude/Longitude | 51.04139389812642 N 114.06002259374952 W |
Sample Provider | |
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Name | Matthew Couger |
mbcouger@gmail.com | |
Institution | Oklahoma State Universtiy |
Date Collected | 2012 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 192 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 82 |
Contig N50 | 417833 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN04128839 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5754 |
CDS | 5692 |
pseudo | 86 |
tRNA | 55 |
rRNA | 6 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2622 |
Cytoplasmic Membrane | 1324 |
Periplasmic | 171 |
Outer Membrane | 157 |
Extracellular | 68 |
Unknown | 1212 |
Unknown (This protein may have multiple localization sites) | 147 |
Flagellar | 17 |
Fimbrial | 4 |
T3SS | 4 |
Outer Membrane Vesicle | 9 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |