Strain Overview | |
---|---|
Organism Name | Pseudomonas aeruginosa ATCC 33350 |
Species | Pseudomonas aeruginosa |
Strain | ATCC 33350 |
Description/Title | Microbe sample from Pseudomonas aeruginosa |
Annotated Genes | 5749 |
Partial Genes | 238 |
Host Information |
---|
Geographic Location | |
---|---|
Isolation Source | not collected |
Sample Provider | |
---|---|
Name | Sandra Wingaard Thrane |
sandra.w.thrane@gmail.com | |
Institution | Technical University of Denmark |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 274 |
|
|||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 182 |
Contig N50 | 76754 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN04028039 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 5749 |
CDS | 5688 |
pseudo | 193 |
tRNA | 57 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2596 |
Cytoplasmic Membrane | 1295 |
Periplasmic | 168 |
Outer Membrane | 159 |
Extracellular | 72 |
Unknown | 1261 |
Unknown (This protein may have multiple localization sites) | 148 |
Flagellar | 17 |
Fimbrial | 3 |
Host Associated | 1 |
T3SS | 4 |
Outer Membrane Vesicle | 13 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |