Pseudomonas aeruginosa ATCC 33350

Strain Overview
Organism Name Pseudomonas aeruginosa ATCC 33350
Species Pseudomonas aeruginosa
Strain ATCC 33350
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5749
Partial Genes 238
Host Information
Geographic Location
Isolation Source not collected
Sample Provider
Name Sandra Wingaard Thrane
E-mail sandra.w.thrane@gmail.com
Institution Technical University of Denmark
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 274
nuoD
1
mutL
7
acsA
23
aroE
5
ppsA
12
trpE
7
guaA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 182
Contig N50 76754
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN04028039
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5749
CDS 5688
pseudo 193
tRNA 57
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2596
Cytoplasmic Membrane 1295
Periplasmic 168
Outer Membrane 159
Extracellular 72
Unknown 1261
Unknown (This protein may have multiple localization sites) 148
Flagellar 17
Fimbrial 3
Host Associated 1
T3SS 4
Outer Membrane Vesicle 13

Replicons

169 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF